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genebe-cli installation

This guide walks you through the steps to install genebe-cli, a command-line tool for [briefly describe what genebe-cli does, e.g., "annotating and analyzing genetic data"]. The tool is built with Java and requires Java 21 or later.

Prerequisites​

Before installing genebe-cli, ensure you have the following:

  • Java 21 (or later) installed on your system.
  • A compatible operating system (Windows, macOS, or Linux).

Verify Java Installation​

To check if Java 21 is installed, run the following command in your terminal or command prompt:

java -version

You should see output indicating Java version 21 or higher, such as:

java version "21.0.1" 2023-10-17 LTS

If Java 21 is not installed, download and install it from one of the following sources:

Follow the provider’s instructions to set up Java and ensure the JAVA_HOME environment variable is configured correctly.

Installation Steps​

Download the Pre-built Binary

  1. Visit the genebe-cli Releases page on GitHub.
  2. Download the latest release (e.g., genebe-cli-<version>.jar).
  3. Save the .jar file to a directory of your choice, such as /path/to/genebe-cli/.

Running genebe-cli​

To run genebe-cli, use the following command, replacing <version> with the actual version number:

java -jar /path/to/genebe-cli-<version>.jar

For example:

java -jar genebe-cli-1.0.0.jar

You can also check available commands by running:

java -jar genebe-cli-<version>.jar --help

Troubleshooting​

  • "Java not found" or "UnsupportedClassVersionError": Ensure Java 21 is installed and correctly configured in your PATH or JAVA_HOME. Reinstall Java 21 if needed.

If you encounter other issues, check the genebe-cli GitHub Issues page or file a new issue.

Next Steps​

Now that genebe-cli is installed, explore the ... to learn how to use the tool for [briefly describe primary use case, e.g., "genetic data analysis"].